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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_48455033_48475298_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
48455033 - 48475298
Intron Length:
20266

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGACTA
5'SS Class:
strong_major
3'SS Sequence:
GGGATCACCTAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATACAT
U12 Branch Point Sequence:
CATCACTGAACC
Flanking Amino Acid:
VVIICYKAIKRKPMRKEENG
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
80.8
33.7
Major BPS
74.9
0.62
1
81.3
29.9
Major PPT
48.4
-0
1.1
46.5
40.5
Minor 5ss
35.5
-1.6
3.2
47.7
47.7
Minor BPS
53.6
0.09
1.7
63.57
41

Associated Gene:

Gene:
PRIMA1
Ensembl Gene ID:
ENSAPLG00000010938
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011383
48454933 - 48503838
48906