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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_48475429_48497063_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
48475429 - 48497063
Intron Length:
21635

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
ACTCTCTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TTTTCCACACTC
Flanking Amino Acid:
PPPPRLLVVPAPKSTFCPTE
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
76.2
39.9
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
82.6
0.73
0.8
76.1
31.8
Minor 5ss
35.6
-1.6
2.7
37.6
40
Minor BPS
49.9
-0
2.1
71.62
39.8

Associated Gene:

Gene:
PRIMA1
Ensembl Gene ID:
ENSAPLG00000010938
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011383
48454933 - 48503838
48906