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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_48497215_48503222_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48497215 - 48503222
Intron Length:
6008

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGCCG
5'SS Class:
major
3'SS Sequence:
TGTTTCTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
TGTTTCTTCACA
Flanking Amino Acid:
ALHPLWGSVQITQGEPQKSC
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1.1
57.9
46.7
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
85
0.79
0.8
80
32.1
Minor 5ss
29.7
-2.3
3.4
38.8
46.5
Minor BPS
69.5
0.61
1.7
79.59
36.6

Associated Gene:

Gene:
PRIMA1
Ensembl Gene ID:
ENSAPLG00000010938
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011383
48454933 - 48503838
48906