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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_48558474_48559224_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
48558474 - 48559224
Intron Length:
751

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGTCA
5'SS Class:
strong_major
3'SS Sequence:
GCCTCTCTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TGTTTCTGACCT
Flanking Amino Acid:
EDWAVIKEKAEPPRPLAHLC
Intron Amino Acid Position:
635

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
71
35.1
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
79.8
0.67
0.8
76.4
32.2
Minor 5ss
43.1
-0.8
3
56.5
47.9
Minor BPS
61.8
0.45
1.8
81.31
40.1

Associated Gene:

Gene:
ASB2
Ensembl Gene ID:
ENSAPLG00000010951
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045518
48558337 - 48584974
26638
ENSAPLT00000040970
48558337 - 48584974
26638
ENSAPLT00000011413
48558337 - 48581082
22746