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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_48559379_48562654_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48559379 - 48562654
Intron Length:
3276

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCACA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTTGAAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TTTTTCTTGAAG
Flanking Amino Acid:
QLSTEPTVIQFCDMVSTPEM
Intron Amino Acid Position:
584

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
80.7
33.8
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
84.8
0.78
0.9
87.3
23.7
Minor 5ss
39.7
-1.2
2.8
49.8
46.2
Minor BPS
70.3
0.49
1.5
75.29
36.5

Associated Gene:

Gene:
ASB2
Ensembl Gene ID:
ENSAPLG00000010951
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045518
48558337 - 48584974
26638
ENSAPLT00000040970
48558337 - 48584974
26638
ENSAPLT00000011413
48558337 - 48581082
22746