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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_48563217_48567999_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
48563217 - 48567999
Intron Length:
4783

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGA|GTAAGTTTT
5'SS Class:
major
3'SS Sequence:
CTCCATCCATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
TCTCCATCCATC
Flanking Amino Acid:
LHIAAKKGICEIVSMLIPVT
Intron Amino Acid Position:
396

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
81.6
33.2
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
68.7
0.42
0.9
66.6
33.9
Minor 5ss
47.4
-0.3
2.8
63.8
41.6
Minor BPS
43.8
-0.5
2.1
57.18
41.6

Associated Gene:

Gene:
ASB2
Ensembl Gene ID:
ENSAPLG00000010951
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045518
48558337 - 48584974
26638
ENSAPLT00000040970
48558337 - 48584974
26638
ENSAPLT00000011413
48558337 - 48581082
22746