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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_48568172_48570549_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
48568172 - 48570549
Intron Length:
2378

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCTTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
GGTGCTACAAAG
Flanking Amino Acid:
LEALRYLAKCGADINTQASD
Intron Amino Acid Position:
339

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
79.8
35.3
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
79.8
0.67
0.7
73.1
31.7
Minor 5ss
35.2
-1.7
2.7
39.5
40.9
Minor BPS
40.8
-0.8
1.9
43.62
41.4

Associated Gene:

Gene:
ASB2
Ensembl Gene ID:
ENSAPLG00000010951
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045518
48558337 - 48584974
26638
ENSAPLT00000040970
48558337 - 48584974
26638
ENSAPLT00000011413
48558337 - 48581082
22746