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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_48570796_48572876_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
48570796 - 48572876
Intron Length:
2081

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGTG
5'SS Class:
strong_major
3'SS Sequence:
TCCTTCAAAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTTCCTTCAAAA
Flanking Amino Acid:
NKARETPLYKACERKNAEAA
Intron Amino Acid Position:
257

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.9
76.9
38.6
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
67.2
0.39
1
63
36.2
Minor 5ss
32.8
-2
3.7
45.9
49.3
Minor BPS
61.7
0.36
1.6
74.74
36.2

Associated Gene:

Gene:
ASB2
Ensembl Gene ID:
ENSAPLG00000010951
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045518
48558337 - 48584974
26638
ENSAPLT00000040970
48558337 - 48584974
26638
ENSAPLT00000011413
48558337 - 48581082
22746