About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_48573033_48573677_R


Intron Information:

Intron Rank:
4

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
48573033 - 48573677

Intron Length:
645

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
AAG|GTCAGTGAA

5'SS Class:
strong_major

3'SS Sequence:
GGTTTCTTCACAG|C

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TGGTGAC

U12 Branch Point Sequence:
GGTTTCTTCACA

Flanking Amino Acid:
QVGCLSLLQKAYPGTIDQRT

Intron Amino Acid Position:
205

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
81.4
0.74
1.2
77.6
32.8

Major BPS
56.2
0.15
1.3
48.8
46.3

Major PPT
78.6
0.64
0.9
72.3
37.9

Minor 5ss
27.4
-2.6
2.9
31.8
42.6

Minor BPS
63.6
0.42
1.8
72.49
39.3

Associated Gene:

Gene:
ASB2

Ensembl Gene ID:

Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

48558337 - 48584974
26638

48558337 - 48584974
26638

48558337 - 48581082
22746