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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_48579004_48581015_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
48579004 - 48581015
Intron Length:
2012

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAC|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TCTCCCTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TCTCCCTTTACA
Flanking Amino Acid:
FHTATALHSLRKQNKHKGIK
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1.2
84.4
33.5
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
85.5
0.8
0.7
79.5
26
Minor 5ss
39.8
-1.1
2.8
52.2
37.4
Minor BPS
69.7
0.61
1.6
77.2
39.4

Associated Gene:

Gene:
ASB2
Ensembl Gene ID:
ENSAPLG00000010951
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011413
48558337 - 48581082
22746