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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_48629913_48631629_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48629913 - 48631629
Intron Length:
1717

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGAAA
5'SS Class:
strong_major
3'SS Sequence:
ACTTTTGTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
CCTGATTGAAAT
Flanking Amino Acid:
VETKYMTSIKERMNLARQIE
Intron Amino Acid Position:
681

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
77.3
32.6
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
82.3
0.73
0.9
76.8
36.7
Minor 5ss
30.9
-2.2
3.2
39
46.4
Minor BPS
44.9
-0.3
1.8
58.48
44.6

Associated Gene:

Gene:
DDX24
Ensembl Gene ID:
ENSAPLG00000011111
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011569
48627799 - 48640907
13109