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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_48631819_48632416_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48631819 - 48632416
Intron Length:
598

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAAATGT
5'SS Class:
major
3'SS Sequence:
TGACTTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCATCAT
U12 Branch Point Sequence:
TTTGTCTGACTT
Flanking Amino Acid:
PNVQHVIHYQVPRTSELYVH
Intron Amino Acid Position:
618

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.8
0.47
1.2
67
39.2
Major BPS
75.6
0.64
1.1
76.2
37.5
Major PPT
82
0.72
0.9
76.7
37.2
Minor 5ss
35.4
-1.7
3.1
48.8
46.8
Minor BPS
53
0.17
1.8
75.82
41.6

Associated Gene:

Gene:
DDX24
Ensembl Gene ID:
ENSAPLG00000011111
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011569
48627799 - 48640907
13109