About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_48632493_48634635_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
48632493 - 48634635
Intron Length:
2143

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
ATCACTTTCTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TGTTCATTAAAT
Flanking Amino Acid:
KNLERFAERESCVLLTTDVA
Intron Amino Acid Position:
592

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.5
1.07
0.7
84.1
30.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
75.7
0.58
0.9
72.9
36.6
Minor 5ss
39.6
-1.2
2.8
49.9
46.3
Minor BPS
71.4
0.75
1.7
87.96
36.2

Associated Gene:

Gene:
DDX24
Ensembl Gene ID:
ENSAPLG00000011111
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011569
48627799 - 48640907
13109