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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_48651678_48677181_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
48651678 - 48677181
Intron Length:
25504

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTAAT
5'SS Class:
strong_major
3'SS Sequence:
ATCTTTTTGTAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTAAT
U12 Branch Point Sequence:
GTTTGCATATCT
Flanking Amino Acid:
NDIERAVYLLSSGQDIQGTS
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
81.6
31.4
Major BPS
76.6
0.66
1.1
75.9
36.3
Major PPT
68.5
0.42
1.2
75.3
38.1
Minor 5ss
43.6
-0.7
2.6
59.8
44.7
Minor BPS
49.6
0.05
2.3
77.83
44.1

Associated Gene:

Gene:
PPP4R4
Ensembl Gene ID:
ENSAPLG00000011376
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047016
48650998 - 48723056
72059
ENSAPLT00000033194
48651281 - 48723056
71776
ENSAPLT00000018283
48650998 - 48723056
72059
ENSAPLT00000011863
48650998 - 48743237
92240