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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_48677285_48684907_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48677285 - 48684907
Intron Length:
7623

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGA|GTAAGTTTG
5'SS Class:
major
3'SS Sequence:
TCTGATTATACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
ATGTTCTAAATC
Flanking Amino Acid:
TLRRVLPKIREVLHVAGVEM
Intron Amino Acid Position:
96

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1
72.5
39.9
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
75.1
0.57
1
68.9
40.9
Minor 5ss
45.1
-0.5
2.8
54.8
43.4
Minor BPS
60.5
0.31
1.6
67.71
38.6

Associated Gene:

Gene:
PPP4R4
Ensembl Gene ID:
ENSAPLG00000011376
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033194
48651281 - 48723056
71776
ENSAPLT00000018283
48650998 - 48723056
72059
ENSAPLT00000011863
48650998 - 48743237
92240
ENSAPLT00000047016
48650998 - 48723056
72059