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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_48686396_48688456_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48686396 - 48688456
Intron Length:
2061

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATAATA
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTTATATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
TTTTCCTTTATA
Flanking Amino Acid:
ALPKETIRHEILNPLVSKAQ
Intron Amino Acid Position:
170

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
82.7
29.3
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
79.9
0.67
0.8
76.5
31.2
Minor 5ss
37.1
-1.5
3
49.4
46.4
Minor BPS
78.8
0.9
1.5
87.38
30.3

Associated Gene:

Gene:
PPP4R4
Ensembl Gene ID:
ENSAPLG00000011376
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047016
48650998 - 48723056
72059
ENSAPLT00000033194
48651281 - 48723056
71776
ENSAPLT00000018283
48650998 - 48723056
72059
ENSAPLT00000011863
48650998 - 48743237
92240