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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_48702782_48704670_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48702782 - 48704670
Intron Length:
1889

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTCTA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTTTTTGAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAC
U12 Branch Point Sequence:
TTTTCTTTTTTT
Flanking Amino Acid:
RYTMAISFYEVAKLLNSGVY
Intron Amino Acid Position:
420

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
80.8
33.6
Major BPS
76.2
0.65
0.9
77.4
26.5
Major PPT
74.1
0.54
1.7
88
29.4
Minor 5ss
39.5
-1.2
3
50.5
40
Minor BPS
46.2
-0.2
3.6
83.31
38.3

Associated Gene:

Gene:
PPP4R4
Ensembl Gene ID:
ENSAPLG00000011376
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047016
48650998 - 48723056
72059
ENSAPLT00000033194
48651281 - 48723056
71776
ENSAPLT00000018283
48650998 - 48723056
72059
ENSAPLT00000011863
48650998 - 48743237
92240