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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_48707707_48710261_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48707707 - 48710261
Intron Length:
2555

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGCCCG
5'SS Class:
major
3'SS Sequence:
TCTTTCTTTCAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAA
U12 Branch Point Sequence:
GTATGTTTAACT
Flanking Amino Acid:
HRMLTIILTNNVLPVQKAAA
Intron Amino Acid Position:
536

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.8
0.47
1.1
55.3
43.6
Major BPS
72.1
0.55
1.1
63.7
43.9
Major PPT
80
0.68
1
79.1
33.3
Minor 5ss
35.2
-1.7
3.1
44.6
43
Minor BPS
67.2
0.62
1.8
81.48
40.1

Associated Gene:

Gene:
PPP4R4
Ensembl Gene ID:
ENSAPLG00000011376
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033194
48651281 - 48723056
71776
ENSAPLT00000018283
48650998 - 48723056
72059
ENSAPLT00000011863
48650998 - 48743237
92240
ENSAPLT00000047016
48650998 - 48723056
72059