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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_48711310_48713221_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
48711310 - 48713221
Intron Length:
1912

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACTGTGC
5'SS Class:
major
3'SS Sequence:
TATTTTTTGACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TATTTTTTGACA
Flanking Amino Acid:
ELTHDPVANVRMKLCYLLPK
Intron Amino Acid Position:
620

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.8
0.44
1.1
57.8
42.2
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
82.7
0.74
1
80.1
37.1
Minor 5ss
36.1
-1.6
3.4
50.8
45.8
Minor BPS
74
0.75
1.1
78.4
31.4

Associated Gene:

Gene:
PPP4R4
Ensembl Gene ID:
ENSAPLG00000011376
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033194
48651281 - 48723056
71776
ENSAPLT00000018283
48650998 - 48723056
72059
ENSAPLT00000011863
48650998 - 48743237
92240
ENSAPLT00000047016
48650998 - 48723056
72059