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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_48713367_48714236_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48713367 - 48714236
Intron Length:
870

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTGGT
5'SS Class:
major
3'SS Sequence:
TTTTTCTTTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTTTCTTTATA
Flanking Amino Acid:
DKDVLTIVKRTVLELDRMDI
Intron Amino Acid Position:
669

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.1
69.9
41.1
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
91.9
0.94
0.6
88.3
21.5
Minor 5ss
35.7
-1.6
3.3
45.7
43.5
Minor BPS
72.4
0.7
1.5
82.54
31.8

Associated Gene:

Gene:
PPP4R4
Ensembl Gene ID:
ENSAPLG00000011376
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033194
48651281 - 48723056
71776
ENSAPLT00000018283
48650998 - 48723056
72059
ENSAPLT00000011863
48650998 - 48743237
92240
ENSAPLT00000047016
48650998 - 48723056
72059