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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_48714445_48716758_F

Intron Information:

Intron Rank:
19
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
48714445 - 48716758
Intron Length:
2314

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATATTTT
5'SS Class:
weak_major
3'SS Sequence:
ATTAATTTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
AAATTATTAATT
Flanking Amino Acid:
ERQEHLLLEMEQLEKEKQQS
Intron Amino Acid Position:
708

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1
75.6
34.3
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
77.2
0.61
0.9
74.4
40.3
Minor 5ss
56.1
0.21
2.5
72.3
40
Minor BPS
61.5
0.44
1.5
73.6
36.8

Associated Gene:

Gene:
PPP4R4
Ensembl Gene ID:
ENSAPLG00000011376
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011863
48650998 - 48743237
92240
ENSAPLT00000033194
48651281 - 48723056
71776
ENSAPLT00000018283
48650998 - 48723056
72059