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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_48717336_48717665_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
48717336 - 48717665
Intron Length:
330

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAAGATT
5'SS Class:
major
3'SS Sequence:
CTTGTAATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TCTATATTAAAA
Flanking Amino Acid:
VSGSSSGTSAGKEDKKSKLV
Intron Amino Acid Position:
760

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
0.9
81
32.7
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
74.2
0.55
0.9
71.2
38.6
Minor 5ss
32.1
-2
3.4
47.8
47.9
Minor BPS
53.9
0.12
1.7
66.3
39.7

Associated Gene:

Gene:
PPP4R4
Ensembl Gene ID:
ENSAPLG00000011376
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011863
48650998 - 48743237
92240
ENSAPLT00000047016
48650998 - 48723056
72059
ENSAPLT00000033194
48651281 - 48723056
71776
ENSAPLT00000018283
48650998 - 48723056
72059