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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_48717760_48718174_F

Intron Information:

Intron Rank:
22
Intron Class:
minor-like
Intron Phase:
2
Intron Coordinates:
48717760 - 48718174
Intron Length:
415

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTATCTTTT
5'SS Class:
weak_minor
3'SS Sequence:
TGTTTTGTTTAAG|T
3'SS Class:
minor_hybrid
U2 Branch Point Sequence:
GAATAAT
U12 Branch Point Sequence:
TAATAAGCAATT
Flanking Amino Acid:
PKYSNIDKCPNKSTATGYTS
Intron Amino Acid Position:
791

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.3
0.41
1.2
74.2
37
Major BPS
62.3
0.31
1.3
64.3
39.7
Major PPT
75
0.56
1.1
79.2
38.4
Minor 5ss
83.1
1.11
1.4
84
26.4
Minor BPS
40.3
-0.6
2.3
60.95
42.2

Associated Gene:

Gene:
PPP4R4
Ensembl Gene ID:
ENSAPLG00000011376
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011863
48650998 - 48743237
92240
ENSAPLT00000047016
48650998 - 48723056
72059
ENSAPLT00000033194
48651281 - 48723056
71776
ENSAPLT00000018283
48650998 - 48723056
72059