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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_48718968_48719080_F

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
48718968 - 48719080
Intron Length:
113

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTGACCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTTTTTGACC
Flanking Amino Acid:
NKESQSRKMSIF*
Intron Amino Acid Position:
864

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
1
78.2
36.4
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
81.9
0.72
1
78
40.1
Minor 5ss
36.8
-1.5
3.4
53.8
43.7
Minor BPS
78.9
0.89
1
84.85
26.7

Associated Gene:

Gene:
PPP4R4
Ensembl Gene ID:
ENSAPLG00000011376
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018283
48650998 - 48723056
72059