Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_48719116_48722860_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

3UTR

Intron Coordinates:

48719116 - 48722860

Intron Length:

3745

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTATGTGCA

5'SS Class:

major

3'SS Sequence:

CTTTTGTATGAAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTGTAT

U12 Branch Point Sequence:

TTTTGTATGAAG

Flanking Amino Acid:

3UTR

Intron Amino Acid Position:

3UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.6

0.7

69.5

34.8

Major BPS

71.5

0.53

1.4

71.7

44.6

Major PPT

70.2

0.46

1.1

71.7

37.5

Minor 5ss

39.2

-1.2

46.9

43.8

Minor BPS

45.7

-0.4

2.2

60.35

41.7

Associated Gene:

Gene:

PPP4R4

Ensembl Gene ID:

ENSAPLG00000011376

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018283

48650998 - 48723056

72059