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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_48729428_48730712_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
48729428 - 48730712
Intron Length:
1285

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
ATACACATAACT
Flanking Amino Acid:
LLLVDYILFKGKWLYPFNSK
Intron Amino Acid Position:
236

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
1
90.9
28.7
Major BPS
79
0.72
1
78.4
31.2
Major PPT
88.9
0.88
0.6
88.5
21
Minor 5ss
47.2
-0.3
2.7
68.8
41.8
Minor BPS
55.5
0.25
1.8
75.7
39.7

Associated Gene:

Gene:
SERPINA10
Ensembl Gene ID:
ENSAPLG00000011886
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012370
48726450 - 48737031
10582