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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_48753956_48755848_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
48753956 - 48755848
Intron Length:
1893

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATCTGC
5'SS Class:
major
3'SS Sequence:
TTCTGCCTGACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTTAC
U12 Branch Point Sequence:
TCTGTCTTACCA
Flanking Amino Acid:
IREWSDRLLQSKMRLYFPKF
Intron Amino Acid Position:
304

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
66
40.9
Major BPS
63.8
0.34
1.2
57.4
41.4
Major PPT
73.2
0.52
1
68.6
37.4
Minor 5ss
44.3
-0.6
2.8
59.8
44.8
Minor BPS
60
0.31
1.8
70.02
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011931
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012423
48750444 - 48762846
12403