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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_48756120_48757047_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
48756120 - 48757047
Intron Length:
928

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTATATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TGCATTTTATCT
Flanking Amino Acid:
MLLATFVFFRGNWEKPFKPE
Intron Amino Acid Position:
214

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.3
1.07
0.7
84.4
33.5
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
75.2
0.57
0.9
74.4
33.7
Minor 5ss
36.9
-1.5
3
51.2
45.2
Minor BPS
53.1
0.17
1.6
68.51
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011931
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012423
48750444 - 48762846
12403