Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_48757705_48762749_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

48757705 - 48762749

Intron Length:

5045

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCT|GTAAGTAGT

5'SS Class:

major

3'SS Sequence:

TTTTCCTCCATAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAGTAAT

U12 Branch Point Sequence:

TTTTCCTCCATA

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.61

1.1

75.1

40.8

Major BPS

76.6

0.66

1.1

75.9

36.3

Major PPT

81.3

0.7

77.1

Minor 5ss

40.4

-1.1

2.9

61.4

42.9

Minor BPS

62.9

0.4

79.52

37.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000011931

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012423

48750444 - 48762846

12403