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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_48800648_48801445_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48800648 - 48801445
Intron Length:
798

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTCTA
5'SS Class:
major
3'SS Sequence:
TGTTTTATTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TGTATGCTAATT
Flanking Amino Acid:
TGKPDLKISRAMHKSLLNIH
Intron Amino Acid Position:
360

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
71.7
40.1
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
82.6
0.73
0.8
78.4
34.8
Minor 5ss
39.1
-1.2
3
46.8
42.6
Minor BPS
46.1
-0.2
2.3
69.72
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012195
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012695
48798629 - 48804581
5953