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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_48801594_48802213_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
48801594 - 48802213
Intron Length:
620

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAATTCT
5'SS Class:
major
3'SS Sequence:
TTTAAATTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTCTTTTAAAT
Flanking Amino Acid:
VSKWEKLLERRRVEVYIPKL
Intron Amino Acid Position:
310

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
75.1
35.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
72.5
0.51
1
66.9
42.6
Minor 5ss
42.7
-0.8
2.9
59.9
44.5
Minor BPS
72
0.77
1.3
86.29
32.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012195
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012695
48798629 - 48804581
5953