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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_48826235_48827114_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48826235 - 48827114
Intron Length:
880

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTCAG
5'SS Class:
strong_major
3'SS Sequence:
TGTGTCCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TCATCTGGAGGT
Flanking Amino Acid:
TEEPGLMLSKVIHRAVLSVH
Intron Amino Acid Position:
387

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
1
71.6
40.1
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
80.4
0.68
0.9
73.7
36.9
Minor 5ss
35.3
-1.7
2.9
41.6
39
Minor BPS
39.1
-0.7
2.3
56.99
45.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012205
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012718
48825353 - 48829643
4291