About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_48842874_48843533_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
48842874 - 48843533
Intron Length:
660

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATCTA
5'SS Class:
strong_major
3'SS Sequence:
CTCTGTTCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
GCTTTTTTCACT
Flanking Amino Acid:
VCKWDSKLETRRADLHLPKI
Intron Amino Acid Position:
306

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
80.4
34.2
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
73.6
0.53
0.9
69
35.9
Minor 5ss
37.2
-1.5
3.1
49.8
46.4
Minor BPS
60.2
0.4
1.7
75.46
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012397
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012904
48841340 - 48845361
4022