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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_48843805_48844698_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
48843805 - 48844698
Intron Length:
894

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGACAC
5'SS Class:
strong_major
3'SS Sequence:
TTCCCCCCACTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
ATATATTCAAAT
Flanking Amino Acid:
LVLVNYIYFKAAWEKSFDPT
Intron Amino Acid Position:
216

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
75.1
35.1
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
66.6
0.38
0.8
59.9
31.2
Minor 5ss
32.3
-2
3.1
41.7
45
Minor BPS
49.8
0.07
1.8
70.32
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012397
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012904
48841340 - 48845361
4022