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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_48859515_48860659_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48859515 - 48860659
Intron Length:
1145

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAC
U12 Branch Point Sequence:
TGTTTCTTCACA
Flanking Amino Acid:
TGQPQHRISQAIHQAVVKVD
Intron Amino Acid Position:
423

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.1
1.09
0.7
87
30
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
85
0.79
0.8
80
32.1
Minor 5ss
35.9
-1.6
3
49.5
46.7
Minor BPS
69.5
0.61
1.7
79.59
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029370
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031373
48859309 - 48884551
25243