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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_48864705_48869573_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
48864705 - 48869573
Intron Length:
4869

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGATAT
5'SS Class:
strong_major
3'SS Sequence:
CTTATATTTCAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTTAT
U12 Branch Point Sequence:
TATCCTATAACT
Flanking Amino Acid:
ILLISYIYFNAEWEKPFDPK
Intron Amino Acid Position:
283

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
79.5
29.4
Major BPS
73.7
0.59
1.2
65.7
43.2
Major PPT
70.9
0.47
1.1
68.2
41.5
Minor 5ss
39.8
-1.1
3.2
53.2
45
Minor BPS
67.3
0.62
1.6
84.03
36

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029370
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031373
48859309 - 48884551
25243