Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_48870217_48872182_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

48870217 - 48872182

Intron Length:

1966

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACC|GTAAGTCAT

5'SS Class:

major

3'SS Sequence:

TCTTCTTTTACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TCTTCTTTTACA

Flanking Amino Acid:

EHNRRPFDCTIYTNMKLFFL

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.47

1.3

69.2

43.2

Major BPS

96.5

1.15

0.6

34.2

Major PPT

91.8

0.94

0.6

87.1

23.5

Minor 5ss

37.8

-1.4

3.1

54.8

42.5

Minor BPS

71.5

0.67

1.6

78.96

37.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000029370

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031373

48859309 - 48884551

25243