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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_48872249_48883290_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48872249 - 48883290
Intron Length:
11042

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAG|GCAAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
TTGTGTTCAGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTTAA
U12 Branch Point Sequence:
TTAACCTTTACT
Flanking Amino Acid:
GIPAWINYHEHKQLSKDLCR
Intron Amino Acid Position:
47

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.1
1.11
0.8
73.8
42.8
Major BPS
73.4
0.58
0.9
63.7
35.1
Major PPT
74.5
0.55
1
70.7
39.8
Minor 5ss
29.3
-2.4
3.8
40.6
45.6
Minor BPS
71.2
0.75
1.7
86.26
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029370
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031373
48859309 - 48884551
25243