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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_48883379_48884501_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
48883379 - 48884501
Intron Length:
1123

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTCAAA
5'SS Class:
major
3'SS Sequence:
TGTGTTTTAGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATTTCTATAAAC
Flanking Amino Acid:
QFKTVWAGRFRQSFLVSFRG
Intron Amino Acid Position:
17

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.54
1.1
68.7
37.6
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
77.7
0.62
1
74
40.3
Minor 5ss
44.9
-0.6
2.6
57.3
47
Minor BPS
62.9
0.38
1.7
75.26
34.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029370
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031373
48859309 - 48884551
25243