Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_48961157_48961525_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

48961157 - 48961525

Intron Length:

369

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTATTTCGG

5'SS Class:

major

3'SS Sequence:

CCTCGCCCGACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCTAAC

U12 Branch Point Sequence:

GTCCCCCTAACG

Flanking Amino Acid:

RVHLREEKVEVWFKNRRAKW

Intron Amino Acid Position:

197

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.7

0.56

1.1

58.1

46.2

Major BPS

59.7

0.24

1.1

61.2

32.6

Major PPT

63.2

0.3

33.6

Minor 5ss

39.8

-1.1

2.8

50.5

45.7

Minor BPS

57.1

0.09

1.8

62.79

44.4

Associated Gene:

Gene:

GSC

Ensembl Gene ID:

ENSAPLG00000012404

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012906

48961004 - 48962316

1313