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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_49082114_49082203_R

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
49082114 - 49082203
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAATGTCA
5'SS Class:
major
3'SS Sequence:
TATTTTTTAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TATTTTTTAACA
Flanking Amino Acid:
VYYPMMRPLIEKFSANVPRS
Intron Amino Acid Position:
1842

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
71.2
34.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
84.4
0.77
0.9
81.3
34.8
Minor 5ss
37.1
-1.5
3.2
48.4
47.2
Minor BPS
81.2
0.98
1
83.95
29.4

Associated Gene:

Gene:
DICER1
Ensembl Gene ID:
ENSAPLG00000012407
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012965
49081587 - 49128400
46814