Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_49082367_49084596_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

49082367 - 49084596

Intron Length:

2230

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTTAGTGGT

5'SS Class:

strong_major

3'SS Sequence:

TAATTGCAAACAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTAAT

U12 Branch Point Sequence:

CTTTTTGTAATT

Flanking Amino Acid:

KNEMQGMDSELRRSEEDEEK

Intron Amino Acid Position:

1788

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.4

0.79

1.1

77.3

37.8

Major BPS

84.4

0.85

1.1

34.5

Major PPT

61.3

0.25

1.1

55.8

43.3

Minor 5ss

30.8

-2.2

3.1

41.8

44.7

Minor BPS

58.1

0.33

78.3

39.3

Associated Gene:

Gene:

DICER1

Ensembl Gene ID:

ENSAPLG00000012407

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012965

49081587 - 49128400

46814