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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_49087696_49091509_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
49087696 - 49091509
Intron Length:
3814

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGACTT
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAG
U12 Branch Point Sequence:
TGTTCTTTCACA
Flanking Amino Acid:
NTDKWEKDDVTKENLLANGK
Intron Amino Acid Position:
1404

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
77.2
37.6
Major BPS
58.4
0.21
1.5
67.6
40.6
Major PPT
84.6
0.78
0.8
79.7
32.4
Minor 5ss
38
-1.3
3.3
54.4
43.7
Minor BPS
70
0.62
1.7
79.83
36.4

Associated Gene:

Gene:
DICER1
Ensembl Gene ID:
ENSAPLG00000012407
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012965
49081587 - 49128400
46814