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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_49091666_49093045_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
49091666 - 49093045
Intron Length:
1380

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTCCTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATAAAT
U12 Branch Point Sequence:
TTTATCAGAATA
Flanking Amino Acid:
GRLSYMRSKKVSNCNLYRLG
Intron Amino Acid Position:
1352

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
84.6
33.2
Major BPS
74.5
0.61
1
79.6
29.1
Major PPT
75.8
0.58
1
76.8
31.6
Minor 5ss
39.2
-1.2
2.8
51.8
39
Minor BPS
52.3
0.07
1.7
69.84
36.1

Associated Gene:

Gene:
DICER1
Ensembl Gene ID:
ENSAPLG00000012407
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012965
49081587 - 49128400
46814