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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_49094487_49094798_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
49094487 - 49094798
Intron Length:
312

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACAACA
5'SS Class:
major
3'SS Sequence:
ACATGTATTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TTGTATTAAACT
Flanking Amino Acid:
PLLDVDHTSSRLNLLTPRHL
Intron Amino Acid Position:
996

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1.1
74.4
36
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
67.1
0.38
1
63.3
42.1
Minor 5ss
39.3
-1.2
2.8
50.5
45.5
Minor BPS
60.7
0.41
1.9
80.44
41.7

Associated Gene:

Gene:
DICER1
Ensembl Gene ID:
ENSAPLG00000012407
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012965
49081587 - 49128400
46814