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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_49094982_49096359_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
49094982 - 49096359
Intron Length:
1378

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTATCTATAATA
Flanking Amino Acid:
EDYQDAVIIPRYRNFDQPHR
Intron Amino Acid Position:
935

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
87.3
29
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
91.3
0.93
0.7
89.4
26.5
Minor 5ss
36.7
-1.5
3
52.2
44.4
Minor BPS
67.4
0.54
1.5
77.12
33.5

Associated Gene:

Gene:
DICER1
Ensembl Gene ID:
ENSAPLG00000012407
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012965
49081587 - 49128400
46814