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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_49099652_49102006_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
49099652 - 49102006
Intron Length:
2355

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTTAGTACG
5'SS Class:
major
3'SS Sequence:
TTTTGATTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TCTTTTTTGATT
Flanking Amino Acid:
TKRRQCYPKAIPECLRDSYP
Intron Amino Acid Position:
753

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62
0.28
1.3
60.8
43.5
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
83.8
0.76
0.8
82.1
34.6
Minor 5ss
35.3
-1.7
2.6
46.9
40.8
Minor BPS
71.1
0.75
1.1
81.5
34.7

Associated Gene:

Gene:
DICER1
Ensembl Gene ID:
ENSAPLG00000012407
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012965
49081587 - 49128400
46814