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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_49103246_49103752_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
49103246 - 49103752
Intron Length:
507

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTAGGTATC
5'SS Class:
major
3'SS Sequence:
TATATGTTACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTAAGAAAT
Flanking Amino Acid:
INSPLRASIVGPPMSCARLA
Intron Amino Acid Position:
681

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.8
0.44
1.1
70.9
39.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
66.7
0.38
1
59.6
45.6
Minor 5ss
41.5
-0.9
3.2
59.7
39.2
Minor BPS
45.8
-0.2
2
69.93
39.8

Associated Gene:

Gene:
DICER1
Ensembl Gene ID:
ENSAPLG00000012407
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012965
49081587 - 49128400
46814