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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_49103886_49105237_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
49103886 - 49105237
Intron Length:
1352

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGAGGC
5'SS Class:
major
3'SS Sequence:
CTTGTCAATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
CTCTTGTCAATT
Flanking Amino Acid:
TINTAIGHINRYCARLPSDP
Intron Amino Acid Position:
636

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
65.2
40.3
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
69.9
0.45
0.9
67.6
38
Minor 5ss
29.4
-2.4
3.5
41.3
45.4
Minor BPS
47.4
-0.1
2.2
66.82
44.9

Associated Gene:

Gene:
DICER1
Ensembl Gene ID:
ENSAPLG00000012407
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012965
49081587 - 49128400
46814