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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_49105733_49107334_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
49105733 - 49107334
Intron Length:
1602

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACTTCA
5'SS Class:
strong_major
3'SS Sequence:
ATTCCTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TTAATCTCAAAT
Flanking Amino Acid:
MEVEFRKQEEVLRKFRAHET
Intron Amino Acid Position:
504

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
1.1
77.7
33.5
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
83.2
0.75
0.8
77.6
30.4
Minor 5ss
46
-0.4
2.5
59.7
44.7
Minor BPS
56.8
0.29
1.7
75.37
40.6

Associated Gene:

Gene:
DICER1
Ensembl Gene ID:
ENSAPLG00000012407
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012965
49081587 - 49128400
46814